Example gene models

Source: R/examples.R

Generates a GRanges compatible with geom_genemodel.

example_genemodels()

Value

A GRanges object of length 165.

Details

The result contains about one megabase's worth of genes on human chromosome 17. Data was taken from GRCh38.92 (hg38) gene models from Ensembl and was edited to somewhat simplify data. Original .gtf file is available at the Ensembl database.

See also

geom_genemodel

Examples

gm <- example_genemodels()
print(gm)
#> GRanges object with 165 ranges and 2 metadata columns:
#>         seqnames            ranges strand |     type        name
#>            <Rle>         <IRanges>  <Rle> | <factor> <character>
#>     [1]    chr17 63728411-63728413      - |      CDS  AC046185.1
#>     [2]    chr17 63751940-63752097      - |      CDS  AC046185.1
#>     [3]    chr17 63702845-63704582      - |      UTR  AC046185.1
#>     [4]    chr17 63706635-63707418      - |      UTR  AC046185.1
#>     [5]    chr17 63710728-63710836      - |      UTR  AC046185.1
#>     ...      ...               ...    ... .      ...         ...
#>   [161]    chr17 63411511-63415674      + |      CDS       TANC2
#>   [162]    chr17 63418307-63421952      + |      CDS       TANC2
#>   [163]    chr17 63009556-63009559      + |      UTR       TANC2
#>   [164]    chr17 63399043-63399286      + |      UTR       TANC2
#>   [165]    chr17 63420062-63427699      + |      UTR       TANC2
#>   -------
#>   seqinfo: 1 sequence from hg38 genome